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Proton 20 mg Tablets 14 Tablets is a medicine in a class called pantoprazole "proton pump inhibitors". Proton pills are used to treat stomach ulcers, treat stomach acid, treat acidity and treat acid reflux in adult patients with signs and symptoms of reflux such as regurgitation or heartburn for short-term care. Proton therapy is actually used. Proton is used once to twice daily as directed by the doctor.